Institutional Repository of Chinese Acad Sci, Inst Automat, CAS Key Lab Mol Imaging, Beijing 100190, Peoples R China
Stripe artifact elimination based on nonsubsampled contourlet transform for light sheet fluorescence microscopy | |
Liang, Xiao1,2,3; Zang, Yali1,2,3; Dong, Di1,2,3; Zhang, Liwen1,2; Fang, Mengjie1,2,3; Yang, Xin1,2,3; Arranz, Alicia4; Ripoll, Jorge5,6; Hui, Hui1,2,3; Tian, Jie1,2,3 | |
发表期刊 | JOURNAL OF BIOMEDICAL OPTICS |
2016-10-01 | |
卷号 | 21期号:10页码:1-9 |
文章类型 | Article |
摘要 | Stripe artifacts, caused by high-absorption or high-scattering structures in the illumination light path, are a common drawback in both unidirectional and multidirectional light sheet fluorescence microscopy (LSFM), significantly deteriorating image quality. To circumvent this problem, we present an effective multidirectional stripe remover (MDSR) method based on nonsubsampled contourlet transform (NSCT), which can be used for both unidirectional and multidirectional LSFM. In MDSR, a fast Fourier transform (FFT) filter is designed in the NSCT domain to shrink the stripe components and eliminate the noise. Benefiting from the properties of being multiscale and multidirectional, MDSR succeeds in eliminating stripe artifacts in both unidirectional and multidirectional LSFM. To validate the method, MDSR has been tested on images from a custom-made unidirectional LSFM system and a commercial multidirectional LSFM system, clearly demonstrating that MDSR effectively removes most of the stripe artifacts. Moreover, we performed a comparative experiment with the variational stationary noise remover and the wavelet-FFT methods and quantitatively analyzed the results with a peak signal-to-noise ratio, showing an improved noise removal when using the MDSR method. (C) 2016 Society of Photo-Optical Instrumentation Engineers (SPIE) |
关键词 | Light Sheet Fluorescence Microscopy Nonsubsampled Contourlet Transform Stripe Artifact |
WOS标题词 | Science & Technology ; Life Sciences & Biomedicine ; Physical Sciences |
DOI | 10.1117/1.JBO.21.10.106005 |
关键词[WOS] | PLANE ILLUMINATION MICROSCOPY ; SINGLE-CELL RESOLUTION ; TOMOGRAPHY ; ALGORITHM ; IMAGES |
收录类别 | SCI |
语种 | 英语 |
项目资助者 | National Natural Science Foundation of China under Grant Nos. 81227901, 61231004, 81501616, 81301346, 81527805, and 81671851 ; Instrument Developing Project (Nos. YZ201502 and YZ201457) ; Strategic Priority Research Program of the CAS(XDB02060010) ; Beijing Municipal Science and Technology Commission(Z161100002616022) ; Marie Curie Intra-European Fellowship Program(IEF-2010-275137) ; EC FP7 CIG grant HIGH-THROUGHPUT TOMO ; Spanish MINECO project(FIS2013-41802-R MESO-IMAGING) |
WOS研究方向 | Biochemistry & Molecular Biology ; Optics ; Radiology, Nuclear Medicine & Medical Imaging |
WOS类目 | Biochemical Research Methods ; Optics ; Radiology, Nuclear Medicine & Medical Imaging |
WOS记录号 | WOS:000388213300028 |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://ir.ia.ac.cn/handle/173211/13355 |
专题 | 中国科学院分子影像重点实验室 |
作者单位 | 1.Chinese Acad Sci, Key Lab Mol Imaging, 95 Zhongguancun East Rd, Beijing 100190, Peoples R China 2.State Key Lab Management & Control Complex Syst, 95 Zhongguancun East Rd, Beijing 100190, Peoples R China 3.Univ Chinese Acad Sci, 80 Zhongguancun East Rd, Beijing 100190, Peoples R China 4.Ctr Mol Biol Severo Ochoa, Calle Nicolas Cabrera 1, Madrid 28049, Spain 5.Univ Carlos III Madrid, Dept Bioengn & Aerosp Engn, Escuela Politecn Super, Ave Univ 30, Madrid 28911, Spain 6.Hosp Gregorio Maranon, Inst Invest Sanitaria, Expt Med & Surg Unit, Calle Dr Esquerdo 46, Madrid 28007, Spain |
推荐引用方式 GB/T 7714 | Liang, Xiao,Zang, Yali,Dong, Di,et al. Stripe artifact elimination based on nonsubsampled contourlet transform for light sheet fluorescence microscopy[J]. JOURNAL OF BIOMEDICAL OPTICS,2016,21(10):1-9. |
APA | Liang, Xiao.,Zang, Yali.,Dong, Di.,Zhang, Liwen.,Fang, Mengjie.,...&Tian, Jie.(2016).Stripe artifact elimination based on nonsubsampled contourlet transform for light sheet fluorescence microscopy.JOURNAL OF BIOMEDICAL OPTICS,21(10),1-9. |
MLA | Liang, Xiao,et al."Stripe artifact elimination based on nonsubsampled contourlet transform for light sheet fluorescence microscopy".JOURNAL OF BIOMEDICAL OPTICS 21.10(2016):1-9. |
条目包含的文件 | ||||||
文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
liang2016.pdf(8403KB) | 期刊论文 | 作者接受稿 | 开放获取 | CC BY-NC-SA | 浏览 |
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