ATPP: A Pipeline for Automatic Tractography-Based Brain Parcellation | |
Li, Hai1,2,3; Fan, Lingzhong1,3; Zhuo, Junjie1; Wang, Jiaojian4; Zhang, Yu1,2; Yang, Zhengyi1; Jiang, Tianzi1,2,3,4,5,6 | |
发表期刊 | FRONTIERS IN NEUROINFORMATICS |
2017-05-29 | |
期号 | 11页码:35 |
文章类型 | Article |
摘要 | There is a longstanding effort to parcellate brain into areas based on micro-structural, macro-structural, or connectional features, forming various brain atlases. Among them, connectivity-based parcellation gains much emphasis, especially with the considerable progress of multimodal magnetic resonance imaging in the past two decades. The Brainnetome Atlas published recently is such an atlas that follows the framework of connectivity-based parcellation. However, in the construction of the atlas, the deluge of high resolution multimodal MRI data and time-consuming computation poses challenges and there is still short of publically available tools dedicated to parcellation. In this paper, we present an integrated open source pipeline(https://www.nitrc.org/projects/atpp),named Automatic Tractography-based Parcellation Pipeline (ATPP) to realize the framework of parcellation with automatic processing and massive parallel computing. ATPP is developed to have a powerful and flexible command line version, taking multiple regions of interest as input, as well as a user-friendly graphical user interface version for parcellating single region of interest. We demonstrate the two versions by parcellating two brain regions, left precentral gyrus and middle frontal gyrus, on two independent datasets. In addition, ATPP has been successfully utilized and fully validated in a variety of brain regions and the human Brainnetome Atlas, showing the capacity to greatly facilitate brain parcellation. |
关键词 | Parcellation Brain Atlas Neuroimaging Pipeline Diffusion Tractography Parallel Computing |
WOS标题词 | Science & Technology ; Life Sciences & Biomedicine |
DOI | 10.3389/fninf.2017.00035 |
关键词[WOS] | CONNECTIVITY-BASED PARCELLATION ; FUNCTIONAL CONNECTIVITY ; STRUCTURAL CONNECTIVITY ; CORTEX ; MRI ; ORGANIZATION ; ARCHITECTURE ; BRAINNETOME ; PROFILES ; PATTERNS |
收录类别 | SCI |
语种 | 英语 |
项目资助者 | National Natural Science Foundation of China(91132301 ; Strategic Priority Research Program of the Chinese Academy of Sciences(XDB02030300) ; Science Frontier Program of the Chinese Academy of Sciences(QYZDJ-SSW-SMC019) ; Beijing Municipal Science and Technology Commission(Z161100000216139) ; 31620103905 ; 81501179) |
WOS研究方向 | Mathematical & Computational Biology ; Neurosciences & Neurology |
WOS类目 | Mathematical & Computational Biology ; Neurosciences |
WOS记录号 | WOS:000402097100001 |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://ir.ia.ac.cn/handle/173211/15130 |
专题 | 脑网络组研究 |
作者单位 | 1.Chinese Acad Sci, Inst Automat, Brainnetome Ctr, Beijing, Peoples R China 2.Chinese Acad Sci, Inst Automat, Natl Lab Pattern Recognit, Beijing, Peoples R China 3.Univ Chinese Acad Sci, Beijing, Peoples R China 4.Univ Elect Sci & Technol China, Sch Life Sci & Technol, Minist Educ, Key Lab NeuroInformat, Chengdu, Peoples R China 5.Chinese Acad Sci, Inst Automat, CAS Ctr Excellence Brain Sci & Intelligence Techn, Beijing, Peoples R China 6.Univ Queensland, Queensland Brain Inst, Brisbane, Qld, Australia |
第一作者单位 | 中国科学院自动化研究所; 模式识别国家重点实验室 |
推荐引用方式 GB/T 7714 | Li, Hai,Fan, Lingzhong,Zhuo, Junjie,et al. ATPP: A Pipeline for Automatic Tractography-Based Brain Parcellation[J]. FRONTIERS IN NEUROINFORMATICS,2017(11):35. |
APA | Li, Hai.,Fan, Lingzhong.,Zhuo, Junjie.,Wang, Jiaojian.,Zhang, Yu.,...&Jiang, Tianzi.(2017).ATPP: A Pipeline for Automatic Tractography-Based Brain Parcellation.FRONTIERS IN NEUROINFORMATICS(11),35. |
MLA | Li, Hai,et al."ATPP: A Pipeline for Automatic Tractography-Based Brain Parcellation".FRONTIERS IN NEUROINFORMATICS .11(2017):35. |
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