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BRANT: A Versatile and Extendable Resting-State fMRI Toolkit
Xu, Kaibin1,2,3,4; Liu, Yong1,2,5,6; Zhan, Yafeng1,7; Ren, Jiaji1,2,5; Jiang, Tianzi1,2,6,8,9
Source PublicationFRONTIERS IN NEUROINFORMATICS
2018-09-03
Volume12
SubtypeArticle
AbstractData processing toolboxes for resting-state functional MRI (rs-fMRI) have provided us with a variety of functions and user friendly graphic user interfaces (GUIs). However, many toolboxes only cover a certain range of functions, and use exclusively designed GUIs. To facilitate data processing and alleviate the burden of manually drawing GUIs, we have developed a versatile and extendable MATLAB-based toolbox, BRANT (BRAinNetome fmri Toolkit), with a wide range of rs-fMRI data processing functions and code-generated GUIs. During the implementation, we have also empowered the toolbox with parallel computing techniques, efficient file handling methods for compressed file format, and one-line scripting. In BRANT, users can find rs-fMRI batch processing functions for preprocessing, brain spontaneous activity analysis, functional connectivity analysis, complex network analysis, statistical analysis, and results visualization, while developers can quickly publish scripts with code-generated GUIs.
KeywordBrant Resting-state Fmri Code-generated Gui Preprocessing Visualization
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
DOI10.3389/fninf.2018.00052
WOS KeywordMILD COGNITIVE IMPAIRMENT ; INTRINSIC FUNCTIONAL CONNECTIVITY ; HUMAN CONNECTOME PROJECT ; FALSE DISCOVERY RATE ; ALZHEIMERS-DISEASE ; MOTION ARTIFACT ; CORTICAL NETWORKS ; CEREBRAL-CORTEX ; BRAIN NETWORKS ; GLOBAL SIGNAL
Indexed BySCI
Language英语
Funding OrganizationNational Key R&D Program of China(2016YFC1305904) ; National Natural Science Foundation of China(81571062 ; Strategic Priority Research Program of Chinese Academy of Science(XDBS1020200) ; Youth Innovation Promotion Association CAS(2014119) ; 81471120)
WOS Research AreaMathematical & Computational Biology ; Neurosciences & Neurology
WOS SubjectMathematical & Computational Biology ; Neurosciences
WOS IDWOS:000443504200001
Citation statistics
Document Type期刊论文
Identifierhttp://ir.ia.ac.cn/handle/173211/21823
Collection脑网络组研究中心
Affiliation1.Chinese Acad Sci, Brainnetome Ctr, Inst Automat, Beijing, Peoples R China
2.Chinese Acad Sci, Natl Lab Pattern Recognit, Inst Automat, Beijing, Peoples R China
3.Sinodanish Ctr Educ & Res, Beijing, Peoples R China
4.Univ Chinese Acad Sci, Sinodanish Coll, Beijing, Peoples R China
5.Univ Chinese Acad Sci, Sch Artificial Intelligence, Beijing, Peoples R China
6.Chinese Acad Sci, Inst Automat, CAS Ctr Excellence Brain Sci, Beijing, Peoples R China
7.Southern Med Univ, Sch Biomed Engn, Guangzhou, Guangdong, Peoples R China
8.Univ Elect Sci & Technol China, Sch Life Sci & Technol, Minist Educ, Key Lab NeuroInformat, Chengdu, Sichuan, Peoples R China
9.Univ Queensland, Queensland Brain Inst, Brisbane, Qld, Australia
First Author AffilicationChinese Acad Sci, Inst Automat, Natl Lab Pattern Recognit, Beijing 100190, Peoples R China
Recommended Citation
GB/T 7714
Xu, Kaibin,Liu, Yong,Zhan, Yafeng,et al. BRANT: A Versatile and Extendable Resting-State fMRI Toolkit[J]. FRONTIERS IN NEUROINFORMATICS,2018,12.
APA Xu, Kaibin,Liu, Yong,Zhan, Yafeng,Ren, Jiaji,&Jiang, Tianzi.(2018).BRANT: A Versatile and Extendable Resting-State fMRI Toolkit.FRONTIERS IN NEUROINFORMATICS,12.
MLA Xu, Kaibin,et al."BRANT: A Versatile and Extendable Resting-State fMRI Toolkit".FRONTIERS IN NEUROINFORMATICS 12(2018).
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