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RScan: fast searching structural similarities for structured RNAs in large databases
Xue, Chenghai; Liu, Guo-Ping
Source PublicationBMC GENOMICS
2007-07-31
Volume8
SubtypeArticle
AbstractBackground: Many RNAs have evolutionarily conserved secondary structures instead of primary sequences. Recently, there are an increasing number of methods being developed with focus on the structural alignments for finding conserved secondary structures as well as common structural motifs in pair-wise or multiple sequences. A challenging task is to search similar structures quickly for structured RNA sequences in large genomic databases since existing methods are too slow to be used in large databases.
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
WOS KeywordMULTIPLE SEQUENCE ALIGNMENTS ; SECONDARY STRUCTURES ; NONCODING RNAS ; IDENTIFICATION ; DEFINITION ; PREDICTION ; ALGORITHM ; GENOME ; GENES
Indexed BySCI
Language英语
WOS Research AreaBiotechnology & Applied Microbiology ; Genetics & Heredity
WOS SubjectBiotechnology & Applied Microbiology ; Genetics & Heredity
WOS IDWOS:000248739500001
Citation statistics
Cited Times:3[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ia.ac.cn/handle/173211/9395
Collection09年以前成果
Affiliation1.Tsing Hua Univ, Dept Automat, TNLIST, MOE Key Lab Bioinformat, Beijing 100084, Peoples R China
2.Tsing Hua Univ, Dept Automat, TNLIST, Bioinformat Div, Beijing 100084, Peoples R China
3.Chinese Acad Sci, LCSIS, Inst Automat, Beijing 100080, Peoples R China
4.Univ Glamorgan, Dept Engn, Pontypridd CF37 1DL, M Glam, Wales
Recommended Citation
GB/T 7714
Xue, Chenghai,Liu, Guo-Ping. RScan: fast searching structural similarities for structured RNAs in large databases[J]. BMC GENOMICS,2007,8.
APA Xue, Chenghai,&Liu, Guo-Ping.(2007).RScan: fast searching structural similarities for structured RNAs in large databases.BMC GENOMICS,8.
MLA Xue, Chenghai,et al."RScan: fast searching structural similarities for structured RNAs in large databases".BMC GENOMICS 8(2007).
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