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ScLSTM: single-cell type detection by siamese recurrent network and hierarchical clustering 期刊论文
BMC BIOINFORMATICS, 2023, 卷号: 24, 期号: 1, 页码: 15
作者:  Jiang, Hanjing;  Huang, Yabing;  Li, Qianpeng;  Feng, Boyuan
收藏  |  浏览/下载：48/0  |  提交时间：2023/12/21
Single-cell  ScRNA-seq  Siamese LSTM  Cell type detection  
A novel registration method for long-serial section images of EM with a serial split technique based on unsupervised optical flow network 期刊论文
BIOINFORMATICS, 2023, 卷号: 39, 期号: 8, 页码: 11
作者:  Xin, Tong;  Lv, Yanan;  Chen, Haoran;  Li, Linlin;  Shen, Lijun;  Shan, Guangcun;  Chen, Xi;  Han, Hua
收藏  |  浏览/下载：71/0  |  提交时间：2023/11/17
Joint reconstruction of neuron and ultrastructure via connectivity consensus in electron microscope volumes 期刊论文
BMC Bioinformatics, 2022, 卷号: 23, 期号: 1, 页码: 23
作者:  Hong,Bei;  Liu,Jing;  Zhai,Hao;  Liu,Jiazheng;  Shen,Lijun;  Chen,Xi;  Xie,Qiwei;  Han,Hua
Adobe PDF(3091Kb)  |  收藏  |  浏览/下载：258/73  |  提交时间：2022/11/14
Connectomics  Reconstruction  Connectivity concept  Joint optimization  Electron microscope volumes  
Impaired time-distance reconfiguration patterns in Alzheimer's disease: a dynamic functional connectivity study with 809 individuals from 7 sites 期刊论文
BMC Bioinformatics, 2022, 卷号: 23, 期号: Suppl 6
作者:  Du,Kai;  Chen,Pindong;  Zhao,Kun;  Qu,Yida;  Kang,Xiaopeng;  Liu,Yong;  ,
收藏  |  浏览/下载：161/0  |  提交时间：2022/07/25
Time distance nodal connectivity diversity  Dynamic functional connectivity  Network reconfiguration  Multicenter  Alzheimer's disease  
Denoising of scanning electron microscope images for biological ultrastructure enhancement 期刊论文
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2022, 卷号: 20, 期号: 03, 页码: 21
作者:  Chang, Sheng;  Shen, Lijun;  Li, Linlin;  Chen, Xi;  Han, Hua
Adobe PDF(4726Kb)  |  收藏  |  浏览/下载：234/33  |  提交时间：2022/09/19
SEM  noise model  denoising  variance stabilization transformation  two-stage multi-loss  deep learning  
Spectral clustering of single cells using Siamese nerual network combined with improved affinity matrix 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 12
作者:  Jiang, Hanjing;  Huang, Yabing;  Li, Qianpeng
收藏  |  浏览/下载：160/0  |  提交时间：2022/06/10
scRNA-seq  Sigmoid kernel  Siamese CNN  improved spectral clustering  
Network-based integrative analysis of single-cell transcriptomic and epigenomic data for cell types 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 2, 页码: 13
作者:  Wu, Wenming;  Zhang, Wensheng;  Ma, Xiaoke
收藏  |  浏览/下载：147/0  |  提交时间：2022/07/25
single-cell multi-omics data  integrative analysis  adaptive graph learning  cell type  
Bioinformatics and machine learning methodologies to identify the effects of central nervous system disorders on glioblastoma progression 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 5, 页码: 23
作者:  Rahman, Md Habibur;  Rana, Humayan Kabir;  Peng, Silong;  Hu, Xiyuan;  Chen, Chen;  Quinn, Julian M. W.;  Moni, Mohammad Ali
收藏  |  浏览/下载：179/0  |  提交时间：2021/12/28
bioinformatics  machine learning  central nervous system disorders  glioblastoma  comorbidity  pathway  ontology  proteins  survival analysis  
Few shot domain adaptation for in situ macromolecule structural classification in cryoelectron tomograms 期刊论文
BIOINFORMATICS, 2021, 卷号: 37, 期号: 2, 页码: 185-191
作者:  Yu, Liangyong;  Li, Ran;  Zeng, Xiangrui;  Wang, Hongyi;  Jin, Jie;  Ge, Yang;  Jiang, Rui;  Xu, Min
收藏  |  浏览/下载：149/0  |  提交时间：2021/08/15
PredictFP2: A New Computational Model to Predict Fusion Peptide Domain in All Retroviruses 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 5, 页码: 1714-1720
作者:  Wu, Sijia;  Wu, Xiaoming;  Tian, Jie;  Zhou, Xiaobo;  Huang, Liyu
收藏  |  浏览/下载：120/0  |  提交时间：2021/01/07
Benchmark testing  Amino acids  Support vector machines  Computational modeling  Predictive models  Cells (biology)  Databases  Fusion peptide prediction  FP distribution  hydrophobicity  retrovirus  support vector machine