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Joint reconstruction of neuron and ultrastructure via connectivity consensus in electron microscope volumes
期刊论文
BMC Bioinformatics, 2022, 卷号: 23, 期号: 1, 页码: 23
Authors:
Hong,Bei
;
Liu,Jing
;
Zhai,Hao
;
Liu,Jiazheng
;
Shen,Lijun
;
Chen,Xi
;
Xie,Qiwei
;
Han,Hua
Adobe PDF(3091Kb)
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View/Download:32/0
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Submit date:2022/11/14
Connectomics
Reconstruction
Connectivity concept
Joint optimization
Electron microscope volumes
Fusion and expansion of vitellogenin vesicles during Caenorhabditis elegans intestinal senescence
期刊论文
AGING CELL, 2022, 页码: 13
Authors:
Zhai, Chao
;
Zhang, Nan
;
Li, Xi-Xia
;
Chen, Xi
;
Sun, Fei
;
Dong, Meng-Qiu
Favorite
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View/Download:17/0
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Submit date:2022/11/14
Aging
C
elegans
Senescence
Vesicle fusion
Vitellogenin
Yolk
Expected affine: A registration method for damaged section in serial sections electron microscopy
期刊论文
FRONTIERS IN NEUROINFORMATICS, 2022, 卷号: 16, 页码: 11
Authors:
Xin, Tong
;
Shen, Lijun
;
Li, Linlin
;
Chen, Xi
;
Han, Hua
Favorite
  |  
View/Download:15/0
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Submit date:2022/11/14
image registration
SSEM
broken sections
section fold
section crack
Fear memory-associated synaptic and mitochondrial changes revealed by deep learning-based processing of electron microscopy data
期刊论文
CELL REPORTS, 2022, 卷号: 40, 期号: 5, 页码: 28
Authors:
Liu, Jing
;
Qi, Junqian
;
Chen, Xi
;
Li, Zhenchen
;
Hong, Bei
;
Ma, Hongtu
;
Li, Guoqing
;
Shen, Lijun
;
Liu, Danqian
;
Kong, Yu
;
Zhai, Hao
;
Xie, Qiwei
;
Han, Hua
;
Yang, Yang
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View/Download:29/0
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Submit date:2022/09/19
Denoising of scanning electron microscope images for biological ultrastructure enhancement
期刊论文
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2022, 卷号: 20, 期号: 03, 页码: 21
Authors:
Chang, Sheng
;
Shen, Lijun
;
Li, Linlin
;
Chen, Xi
;
Han, Hua
Favorite
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View/Download:31/0
  |  
Submit date:2022/09/19
SEM
noise model
denoising
variance stabilization transformation
two-stage multi-loss
deep learning
Performance Analysis in Serial-section Electron Microscopy Image Registration of Neuronal Tissue
会议论文
, 美国圣地亚哥, 2022-1
Authors:
Chen BH(陈波昊)
;
Xin T(辛桐)
;
Han H(韩华)
;
Chen X(陈曦)
Adobe PDF(1634Kb)
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View/Download:63/3
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Submit date:2022/06/14
Registration accuracy
Serial section
Neuronal structure
Spherical deformation model
Synaptic degeneration in the prefrontal cortex of a rat AD model revealed by volume electron microscopy
期刊论文
Journal of Molecular Cell Biology, 2022, 页码: 已录用
Authors:
Yi Jiang
;
Linlin Li
;
Keliang Pang
;
Jiazheng Liu
;
Bohao Chen
;
Jingbin Yuan
;
Lijun Shen
;
Xi Chen
;
Bai Lu
;
Hua Han
Adobe PDF(689Kb)
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View/Download:61/7
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Submit date:2022/07/01
An App knock-in rat model for Alzheimer's disease exhibiting A beta and tau pathologies, neuronal death and cognitive impairments
期刊论文
CELL RESEARCH, 2021, 页码: 19
Authors:
Pang, Keliang
;
Jiang, Richeng
;
Zhang, Wei
;
Yang, Zhengyi
;
Li, Lin-Lin
;
Shimozawa, Makoto
;
Tambaro, Simone
;
Mayer, Johanna
;
Zhang, Baogui
;
Li, Man
;
Wang, Jiesi
;
Liu, Hang
;
Yang, Ailing
;
Chen, Xi
;
Liu, Jiazheng
;
Winblad, Bengt
;
Han, Hua
;
Jiang, Tianzi
;
Wang, Weiwen
;
Nilsson, Per
;
Guo, Wei
;
Lu, Bai
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View/Download:60/0
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Submit date:2021/12/28
UTR: UNSUPERVISED LEARNING OF THICKNESS-INSENSITIVE REPRESENTATIONS FOR ELECTRON MICROSCOPE IMAGE
会议论文
, 美国阿拉斯加, 2021-10
Authors:
Xin T(辛桐)
;
Chen BH(陈波昊)
;
Chen X(陈曦)
;
Han H(韩华)
Adobe PDF(2365Kb)
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View/Download:55/5
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Submit date:2022/06/14
Feature Descriptor
Unsupervised learning
Electron Microscopy
Image registration
FIB-SEM
Three-dimensional ATUM-SEM reconstruction and analysis of hepatic endoplasmic reticulum-organelle interactions
期刊论文
JOURNAL OF MOLECULAR CELL BIOLOGY, 2021, 卷号: 13, 期号: 9, 页码: 636-645
Authors:
Jiang, Yi
;
Li, Linlin
;
Chen, Xi
;
Liu, Jiazheng
;
Yuan, Jingbin
;
Xie, Qiwei
;
Han, Hua
Adobe PDF(1914Kb)
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View/Download:79/3
  |  
Submit date:2022/01/27
3D reconstruction
ATUM-SEM
deep learning
liver
ER
MCSs