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A robust transformer-based pipeline of 3D cell alignment, denoise and instance segmentation on electron microscopy sequence images 期刊论文
Journal of Plant Physiology, 2024, 页码: 154236
作者:  Jiazheng, Liu;  Yafeng, Zheng;  Limei, Lin;  Jingyue, Guo;  Yanan, Lv;  Jingbin, Yuan;  Hao, Zhai;  Xi, Chen;  Lijun, Shen;  LinLin, Li;  Shunong, Bai;  Hua, Han
Adobe PDF(15549Kb)  |  收藏  |  浏览/下载：14/4  |  提交时间：2024/06/11
Deciphering the neural mechanisms of miR-134 in major depressive disorder with population-based and person-specific imaging transcriptomic techniques 期刊论文
PSYCHIATRY RESEARCH, 2023, 卷号: 329, 页码: 12
作者:  Lou, Jing;  Liu, Kai;  Wen, Junyan;  He, Yini;  Sun, Yuqing;  Tian, Xiaohan;  Hu, Ke;  Deng, Yanjia;  Liu, Bing;  Wen, Ge
Adobe PDF(7406Kb)  |  收藏  |  浏览/下载：59/5  |  提交时间：2024/02/22
Major depressive disorder (MDD)  miR-134  Two -stage cross -scale imaging transcriptomic  analyses  Biomarkers  Multi-omics  
An intelligent workflow for sub-nanoscale 3D reconstruction of intact synapses from serial section electron tomography 期刊论文
BMC BIOLOGY, 2023, 卷号: 21, 期号: 1, 页码: 14
作者:  Chang, Sheng;  Li, Linlin;  Hong, Bei;  Liu, Jing;  Xu, Yuxuan;  Pang, Keliang;  Zhang, Lina;  Han, Hua;  Chen, Xi
收藏  |  浏览/下载：104/0  |  提交时间：2023/11/16
Serial section electron tomography  3D EM  Semi-auto locating  Auto-alignment  Missing-information restoration  Semi-auto segmentation  Workflow  Synapse  
STDIN: Spatio-temporal distilled interpolation for electron microscope images 期刊论文
NEUROCOMPUTING, 2022, 卷号: 505, 页码: 188-202
作者:  Wang, Zejin;  Sun, Guodong;  Li, Guoqing;  Shen, Lijun;  Zhang, Lina;  Han, Hua
Adobe PDF(6579Kb)  |  收藏  |  浏览/下载：269/26  |  提交时间：2022/11/14
Spatio-temporal ensemble  Feedback distillation  Electron microscope interpolation  
Joint reconstruction of neuron and ultrastructure via connectivity consensus in electron microscope volumes 期刊论文
BMC Bioinformatics, 2022, 卷号: 23, 期号: 1, 页码: 23
作者:  Hong,Bei;  Liu,Jing;  Zhai,Hao;  Liu,Jiazheng;  Shen,Lijun;  Chen,Xi;  Xie,Qiwei;  Han,Hua
Adobe PDF(3091Kb)  |  收藏  |  浏览/下载：350/82  |  提交时间：2022/11/14
Connectomics  Reconstruction  Connectivity concept  Joint optimization  Electron microscope volumes  
Dynamic reconfiguration of human brain networks across altered states of consciousness 期刊论文
BEHAVIOURAL BRAIN RESEARCH, 2022, 卷号: 419, 页码: 11
作者:  Liu, Haiyang;  Hu, Ke;  Peng, Yingjie;  Tian, Xiaohan;  Wang, Meng;  Ma, Bo;  Wu, Youxuan;  Sun, Wanchen;  Liu, Bing;  Li, Ang;  Han, Ruquan
Adobe PDF(6615Kb)  |  收藏  |  浏览/下载：283/9  |  提交时间：2022/06/06
Functional magnetic resonance imaging  Multilayer networks  Dynamic functional connectivity  Consciousness  Sedation  Dexmedetomidine  
An effective AI integrated system for neuron tracing on anisotropic electron microscopy volume 期刊论文
Biomedical Signal Processing and Control, 2021, 卷号: 69, 期号: 无, 页码: 102829
作者:  Liu, Jing;  Hong, Bei;  Chen, Xi;  Xie, Qiwei;  Tang, Yuanyan;  Han, Hua
Adobe PDF(14559Kb)  |  收藏  |  浏览/下载：253/37  |  提交时间：2022/01/12
Neuron tracing  Electron microscopy  Deep learning  Convolutional LSTM  
Pairwise interactions in gene expression determine a hierarchical transcriptional profile in the human brain 期刊论文
Science Bulletin, 2021, 卷号: 66, 期号: 无, 页码: 无
作者:  Hua, Jiaojiao;  Yang, Zhengyi;  Jiang, Tianzi;  Yu, Shan
Adobe PDF(3690Kb)  |  收藏  |  浏览/下载：238/53  |  提交时间：2021/06/17
Gene-gene interaction  Co-expression  Structural networkFunctional network  Functional network  Higher-order interactions  
Sparse self-attention aggregation networks for neural sequence slice interpolation 期刊论文
BioData Mining, 2021, 卷号: 14, 期号: 1, 页码: 19
作者:  Wang, Zejin;  Liu, Jing;  Chen, Xi;  Li, Guoqing;  Han, Hua
Adobe PDF(5022Kb)  |  收藏  |  浏览/下载：299/43  |  提交时间：2021/02/18
Slice interpolation  Biological tissue recovery  EM images  Sparse self-attention network  Adaptive style-balance loss  
A Noniterative Simultaneous Rigid Registration Method for Serial Sections of Biological Tissues 期刊论文
APPLIED SCIENCES-BASEL, 2019, 期号: 3, 页码: 14
作者:  Chang Shu;  Linlin Li;  Guoqing Li;  Xi Chen;  Hua Han
Adobe PDF(3363Kb)  |  收藏  |  浏览/下载：197/63  |  提交时间：2020/10/14
image registrationvolume reconstruction from series of microscopy sectionsconstrained simultaneous registration problemnoniterative algorithm