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A robust transformer-based pipeline of 3D cell alignment, denoise and instance segmentation on electron microscopy sequence images 期刊论文
Journal of Plant Physiology, 2024, 页码: 154236
作者:  Jiazheng, Liu;  Yafeng, Zheng;  Limei, Lin;  Jingyue, Guo;  Yanan, Lv;  Jingbin, Yuan;  Hao, Zhai;  Xi, Chen;  Lijun, Shen;  LinLin, Li;  Shunong, Bai;  Hua, Han
Adobe PDF(15549Kb)  |  收藏  |  浏览/下载：32/9  |  提交时间：2024/06/11
Joint reconstruction of neuron and ultrastructure via connectivity consensus in electron microscope volumes 期刊论文
BMC Bioinformatics, 2022, 卷号: 23, 期号: 1, 页码: 23
作者:  Hong,Bei;  Liu,Jing;  Zhai,Hao;  Liu,Jiazheng;  Shen,Lijun;  Chen,Xi;  Xie,Qiwei;  Han,Hua
Adobe PDF(3091Kb)  |  收藏  |  浏览/下载：375/86  |  提交时间：2022/11/14
Connectomics  Reconstruction  Connectivity concept  Joint optimization  Electron microscope volumes  
Denoising of scanning electron microscope images for biological ultrastructure enhancement 期刊论文
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2022, 卷号: 20, 期号: 03, 页码: 21
作者:  Chang, Sheng;  Shen, Lijun;  Li, Linlin;  Chen, Xi;  Han, Hua
Adobe PDF(4726Kb)  |  收藏  |  浏览/下载：320/45  |  提交时间：2022/09/19
SEM  noise model  denoising  variance stabilization transformation  two-stage multi-loss  deep learning  
Synaptic degeneration in the prefrontal cortex of a rat AD model revealed by volume electron microscopy 期刊论文
Journal of Molecular Cell Biology, 2022, 页码: 已录用
作者:  Yi Jiang;  Linlin Li;  Keliang Pang;  Jiazheng Liu;  Bohao Chen;  Jingbin Yuan;  Lijun Shen;  Xi Chen;  Bai Lu;  Hua Han
Adobe PDF(689Kb)  |  收藏  |  浏览/下载：427/176  |  提交时间：2022/07/01
Three-dimensional ATUM-SEM reconstruction and analysis of hepatic endoplasmic reticulum-organelle interactions 期刊论文
JOURNAL OF MOLECULAR CELL BIOLOGY, 2021, 卷号: 13, 期号: 9, 页码: 636-645
作者:  Jiang, Yi;  Li, Linlin;  Chen, Xi;  Liu, Jiazheng;  Yuan, Jingbin;  Xie, Qiwei;  Han, Hua
Adobe PDF(1914Kb)  |  收藏  |  浏览/下载：350/51  |  提交时间：2022/01/27
3D reconstruction  ATUM-SEM  deep learning  liver  ER  MCSs  
Sparse self-attention aggregation networks for neural sequence slice interpolation 期刊论文
BioData Mining, 2021, 卷号: 14, 期号: 1, 页码: 19
作者:  Wang, Zejin;  Liu, Jing;  Chen, Xi;  Li, Guoqing;  Han, Hua
Adobe PDF(5022Kb)  |  收藏  |  浏览/下载：318/45  |  提交时间：2021/02/18
Slice interpolation  Biological tissue recovery  EM images  Sparse self-attention network  Adaptive style-balance loss  
Application of Horseradish Peroxidase Labeling Along With Post-Staining Improves Data Quality in Micro-Brain Connectomics 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2020, 卷号: 47, 期号: 10, 页码: 1090-1096
作者:  Wang Sheng-Xiong;  Chen Zhen-Qiang;  Han Hua;  Guo Ai-Ke
收藏  |  浏览/下载：177/0  |  提交时间：2021/01/06
brain connectomics  volume electron microscopy  sample preparation  
Virus Identification in Electron Microscopy Images by Residual Mixed Attention Network 期刊论文
Computer Methods and Programs in Biomedicine, 2021, 卷号: 198, 期号: 198, 页码: 105766
作者:  Xiao, Chi;  Chen, Xi;  Xie, Qiwei;  Li, Guoqing;  Xiao, Hao;  Song, Jingdong;  Han, Hua
浏览  |  Adobe PDF(2439Kb)  |  收藏  |  浏览/下载：365/81  |  提交时间：2020/10/24
Virus identification  viral morphology  transmission electron microscopy  deep learning  attention mechanism  
Nanobar array assay revealed complementary roles of BIN1 splice isoforms in cardiac T-tubule morphogenesis 期刊论文
Nano Letters, 2020, 卷号: 20, 期号: 20, 页码: 9
作者:  Lin-Lin Li;  Qian-Jin Guo;  Hsin-Ya Lou;  Jing-Hui Liang;  Yang Yang;  Xin Xing;  Hong-Tao Li;  Jing Han;  Shan Shen;  Hui Li;  Haihong Ye;  Hao Di Wu;  Bianxiao Cui;  Shi-Qiang Wang
浏览  |  Adobe PDF(7678Kb)  |  收藏  |  浏览/下载：264/53  |  提交时间：2020/10/14
nanopillar array BIN1 splicing isoforms T-tubule muscle contraction heart disease  
A new early Miocene fossil genus from Dominican amber extends the Eastern Asia distribution of Paricanini (Hemiptera: Fulgoromorpha: Tropiduchidae) to the Neotropics 期刊论文
PALAEONTOLOGIA ELECTRONICA, 2019, 卷号: 22, 期号: 3, 页码: 15
作者:  Bourgoin, Thierry;  Wang, Rong-Rong;  Szwedo, Jacek;  Li, Xin-Yu;  Chen, Xi
浏览  |  Adobe PDF(4241Kb)  |  收藏  |  浏览/下载：284/68  |  提交时间：2020/03/30
early Miocene  Dominican amber  Hispaniola Island  Laurasian lineage  new genus  new species