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CASIA OpenIR
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A robust transformer-based pipeline of 3D cell alignment, denoise and instance segmentation on electron microscopy sequence images 期刊论文
Journal of Plant Physiology, 2024, 页码: 154236
作者:  Jiazheng, Liu;  Yafeng, Zheng;  Limei, Lin;  Jingyue, Guo;  Yanan, Lv;  Jingbin, Yuan;  Hao, Zhai;  Xi, Chen;  Lijun, Shen;  LinLin, Li;  Shunong, Bai;  Hua, Han
Adobe PDF(15549Kb)  |  收藏  |  浏览/下载：9/3  |  提交时间：2024/06/11
Electron Microscopic Sequential Images Stitching Based on Belief Propagation 会议论文
Eleventh International Conference on Graphics and Image Processing (ICGIP 2019), Hangzhou, China, 12-14 OCTOBER 2019
作者:  Chang, Sheng;  Zhou, Fangxu;  Chen, Xi;  Han, Hua
Adobe PDF(479Kb)  |  收藏  |  浏览/下载：133/48  |  提交时间：2023/06/28
Electron Microscope Image  Sequential Image  Image Stitching  Belief Propagation  
Expected affine: A registration method for damaged section in serial sections electron microscopy 期刊论文
FRONTIERS IN NEUROINFORMATICS, 2022, 卷号: 16, 页码: 11
作者:  Xin, Tong;  Shen, Lijun;  Li, Linlin;  Chen, Xi;  Han, Hua
收藏  |  浏览/下载：224/0  |  提交时间：2022/11/14
image registration  SSEM  broken sections  section fold  section crack  
Joint reconstruction of neuron and ultrastructure via connectivity consensus in electron microscope volumes 期刊论文
BMC Bioinformatics, 2022, 卷号: 23, 期号: 1, 页码: 23
作者:  Hong,Bei;  Liu,Jing;  Zhai,Hao;  Liu,Jiazheng;  Shen,Lijun;  Chen,Xi;  Xie,Qiwei;  Han,Hua
Adobe PDF(3091Kb)  |  收藏  |  浏览/下载：347/80  |  提交时间：2022/11/14
Connectomics  Reconstruction  Connectivity concept  Joint optimization  Electron microscope volumes  
Denoising of scanning electron microscope images for biological ultrastructure enhancement 期刊论文
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2022, 卷号: 20, 期号: 03, 页码: 21
作者:  Chang, Sheng;  Shen, Lijun;  Li, Linlin;  Chen, Xi;  Han, Hua
Adobe PDF(4726Kb)  |  收藏  |  浏览/下载：301/41  |  提交时间：2022/09/19
SEM  noise model  denoising  variance stabilization transformation  two-stage multi-loss  deep learning  
Using Scale Information to Improve SIFT-Based Electron Microscope Image Registration Method 会议论文
, 中国浙江省杭州市, 2019-9
作者:  Chen BH(陈波昊);  Chang S(常胜);  Chen X(陈曦);  Han H(韩华)
Adobe PDF(554Kb)  |  收藏  |  浏览/下载：168/58  |  提交时间：2022/06/14
SIFT  Image Registration  RANSAC  Electron Microscope  
UTR: UNSUPERVISED LEARNING OF THICKNESS-INSENSITIVE REPRESENTATIONS FOR ELECTRON MICROSCOPE IMAGE 会议论文
, 美国阿拉斯加, 2021-10
作者:  Xin T(辛桐);  Chen BH(陈波昊);  Chen X(陈曦);  Han H(韩华)
Adobe PDF(2365Kb)  |  收藏  |  浏览/下载：234/44  |  提交时间：2022/06/14
Feature Descriptor  Unsupervised learning  Electron Microscopy  Image registration  FIB-SEM  
An Effective Encoder-Decoder Network for Neural Cell Bodies and Cell Nucleus Segmentation of EM Images 会议论文
, 德国柏林, 2019-7
作者:  Jiang Yi;  Xiao Chi;  Li Linlin;  Shen Lijun;  Chen Xi;  Han Hua
Adobe PDF(6217Kb)  |  收藏  |  浏览/下载：212/56  |  提交时间：2022/06/14
Encoder-Decoder  Electron Microscopy  Neural Cell Bodies  Cell Nucleus  Image Segmentation  
An effective AI integrated system for neuron tracing on anisotropic electron microscopy volume 期刊论文
Biomedical Signal Processing and Control, 2021, 卷号: 69, 期号: 无, 页码: 102829
作者:  Liu, Jing;  Hong, Bei;  Chen, Xi;  Xie, Qiwei;  Tang, Yuanyan;  Han, Hua
Adobe PDF(14559Kb)  |  收藏  |  浏览/下载：252/36  |  提交时间：2022/01/12
Neuron tracing  Electron microscopy  Deep learning  Convolutional LSTM  
Sparse self-attention aggregation networks for neural sequence slice interpolation 期刊论文
BioData Mining, 2021, 卷号: 14, 期号: 1, 页码: 19
作者:  Wang, Zejin;  Liu, Jing;  Chen, Xi;  Li, Guoqing;  Han, Hua
Adobe PDF(5022Kb)  |  收藏  |  浏览/下载：297/42  |  提交时间：2021/02/18
Slice interpolation  Biological tissue recovery  EM images  Sparse self-attention network  Adaptive style-balance loss