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CASIA OpenIR
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A robust transformer-based pipeline of 3D cell alignment, denoise and instance segmentation on electron microscopy sequence images 期刊论文
Journal of Plant Physiology, 2024, 页码: 154236
作者:  Jiazheng, Liu;  Yafeng, Zheng;  Limei, Lin;  Jingyue, Guo;  Yanan, Lv;  Jingbin, Yuan;  Hao, Zhai;  Xi, Chen;  Lijun, Shen;  LinLin, Li;  Shunong, Bai;  Hua, Han
Adobe PDF(15549Kb)  |  收藏  |  浏览/下载：30/9  |  提交时间：2024/06/11
Expected affine: A registration method for damaged section in serial sections electron microscopy 期刊论文
FRONTIERS IN NEUROINFORMATICS, 2022, 卷号: 16, 页码: 11
作者:  Xin, Tong;  Shen, Lijun;  Li, Linlin;  Chen, Xi;  Han, Hua
收藏  |  浏览/下载：238/0  |  提交时间：2022/11/14
image registration  SSEM  broken sections  section fold  section crack  
Joint reconstruction of neuron and ultrastructure via connectivity consensus in electron microscope volumes 期刊论文
BMC Bioinformatics, 2022, 卷号: 23, 期号: 1, 页码: 23
作者:  Hong,Bei;  Liu,Jing;  Zhai,Hao;  Liu,Jiazheng;  Shen,Lijun;  Chen,Xi;  Xie,Qiwei;  Han,Hua
Adobe PDF(3091Kb)  |  收藏  |  浏览/下载：368/83  |  提交时间：2022/11/14
Connectomics  Reconstruction  Connectivity concept  Joint optimization  Electron microscope volumes  
Denoising of scanning electron microscope images for biological ultrastructure enhancement 期刊论文
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2022, 卷号: 20, 期号: 03, 页码: 21
作者:  Chang, Sheng;  Shen, Lijun;  Li, Linlin;  Chen, Xi;  Han, Hua
Adobe PDF(4726Kb)  |  收藏  |  浏览/下载：317/45  |  提交时间：2022/09/19
SEM  noise model  denoising  variance stabilization transformation  two-stage multi-loss  deep learning  
An Effective Encoder-Decoder Network for Neural Cell Bodies and Cell Nucleus Segmentation of EM Images 会议论文
, 德国柏林, 2019-7
作者:  Jiang Yi;  Xiao Chi;  Li Linlin;  Shen Lijun;  Chen Xi;  Han Hua
Adobe PDF(6217Kb)  |  收藏  |  浏览/下载：224/59  |  提交时间：2022/06/14
Encoder-Decoder  Electron Microscopy  Neural Cell Bodies  Cell Nucleus  Image Segmentation  
Deep Learning and Shapes Similarity for Joint Segmentation and Tracing single Neurons in SEM images 会议论文
, 美国 奥兰多, 2017-2-10
作者:  Rao Q(饶强);  Xiao C(肖驰);  Han H(韩华);  Shen LJ(沈丽君);  Chen X(陈曦);  Xie QW(谢启伟)
浏览  |  Adobe PDF(1219Kb)  |  收藏  |  浏览/下载：453/219  |  提交时间：2017/06/06
Deep Convolutional Neural Network  Active Contour  Neuron Reconstruction  Membrane Detection Probability Map  Neuron Tracing