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CASIA OpenIR
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A robust transformer-based pipeline of 3D cell alignment, denoise and instance segmentation on electron microscopy sequence images 期刊论文
Journal of Plant Physiology, 2024, 页码: 154236
作者:  Jiazheng, Liu;  Yafeng, Zheng;  Limei, Lin;  Jingyue, Guo;  Yanan, Lv;  Jingbin, Yuan;  Hao, Zhai;  Xi, Chen;  Lijun, Shen;  LinLin, Li;  Shunong, Bai;  Hua, Han
Adobe PDF(15549Kb)  |  收藏  |  浏览/下载：29/8  |  提交时间：2024/06/11
Deep residual contextual and subpixel convolution network for automated neuronal structure segmentation in micro-connectomics 期刊论文
Computer Methods and Programs in Biomedicine, 2022, 卷号: 219, 页码: 106759
作者:  Xiao, Chi;  Hong, Bei;  Liu, Jing;  Tang, Yuanyan;  Xie, Qiwei;  Han, Hua
Adobe PDF(2731Kb)  |  收藏  |  浏览/下载：298/71  |  提交时间：2023/01/12
Deep learning  Neuronal structure segmentation  Subpixel convolution  Electron microscopy  Micro-Connectomics  
Synaptic degeneration in the prefrontal cortex of a rat AD model revealed by volume electron microscopy 期刊论文
Journal of Molecular Cell Biology, 2022, 页码: 已录用
作者:  Yi Jiang;  Linlin Li;  Keliang Pang;  Jiazheng Liu;  Bohao Chen;  Jingbin Yuan;  Lijun Shen;  Xi Chen;  Bai Lu;  Hua Han
Adobe PDF(689Kb)  |  收藏  |  浏览/下载：423/173  |  提交时间：2022/07/01
Three-dimensional ATUM-SEM reconstruction and analysis of hepatic endoplasmic reticulum-organelle interactions 期刊论文
JOURNAL OF MOLECULAR CELL BIOLOGY, 2021, 卷号: 13, 期号: 9, 页码: 636-645
作者:  Jiang, Yi;  Li, Linlin;  Chen, Xi;  Liu, Jiazheng;  Yuan, Jingbin;  Xie, Qiwei;  Han, Hua
Adobe PDF(1914Kb)  |  收藏  |  浏览/下载：346/50  |  提交时间：2022/01/27
3D reconstruction  ATUM-SEM  deep learning  liver  ER  MCSs  
An effective AI integrated system for neuron tracing on anisotropic electron microscopy volume 期刊论文
Biomedical Signal Processing and Control, 2021, 卷号: 69, 期号: 无, 页码: 102829
作者:  Liu, Jing;  Hong, Bei;  Chen, Xi;  Xie, Qiwei;  Tang, Yuanyan;  Han, Hua
Adobe PDF(14559Kb)  |  收藏  |  浏览/下载：263/39  |  提交时间：2022/01/12
Neuron tracing  Electron microscopy  Deep learning  Convolutional LSTM  
An effective fully deep convolutional neural network for mitochondria segmentation based on ATUM-SEM 会议论文
, 美国休斯敦, 2018-2
作者:  Xiao C(肖驰);  Li WF(李伟夫);  Chen X(陈曦);  Han H(韩华);  Xie QW(谢启伟)
浏览  |  Adobe PDF(1314Kb)  |  收藏  |  浏览/下载：334/107  |  提交时间：2019/05/10
Electron Microscope, Deep learning, Mitochondria segmentation  
Effective automated pipeline for 3D reconstruction of synapses based on deep learning 期刊论文
BMC Bioinformatics, 2018, 卷号: 19, 期号: 1, 页码: 263
作者:  Xiao, Chi;  Li, Weifu;  Deng, Hao;  Chen, Xi;  Yang, Yang;  Xie, QiWei;  Han, Hua
浏览  |  Adobe PDF(7961Kb)  |  收藏  |  浏览/下载：348/106  |  提交时间：2019/05/06
Electron Microscope, Synapse Detection, Deep Learning, Synapse Segmentation, 3d Reconstruction Of Synapses  
Automatic Mitochondria Segmentation for EM Data Using a 3D Supervised Convolutional Network 期刊论文
FRONTIERS IN NEUROANATOMY, 2018, 期号: 12, 页码: 92
作者:  Xiao, Chi;  Chen, Xi;  Li, Weifu;  Li, Linlin;  Wang, Lu;  Xie, Qiwei;  Han, Hua
浏览  |  Adobe PDF(3873Kb)  |  收藏  |  浏览/下载：466/85  |  提交时间：2019/01/08
electron microscope  deep learning  volumetric mitochondria segmentation  mitochondria morphology  neuroinformatics  
Large scale three-dimensional reconstruction of an entire &ITCaenorhabditis elegans&IT larva using AutoCUTS-SEM 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 卷号: 200, 期号: 2, 页码: 87-96
作者:  Li, Xixia;  Ji, Gang;  Chen, Xi;  Ding, Wei;  Sun, Lei;  Xu, Wei;  Han, Hua;  Sun, Fei
浏览  |  Adobe PDF(1537Kb)  |  收藏  |  浏览/下载：439/169  |  提交时间：2018/10/10
Automation  Caenorhabditis Elegans  Scanning Electron Microscopy  3d Reconstruction  Volume Electron Microscopy  
A Refined Spatial Transformer Network 会议论文
, Siem Reap, Cambodia, 13-16 December, 2018
作者:  Shu, Chang;  Chen, Xi;  Yu, Chong;  Han, Hua
浏览  |  Adobe PDF(1085Kb)  |  收藏  |  浏览/下载：424/150  |  提交时间：2018/10/09
Spatial invariance  Geometrical distortion  Spatial transformer networks  Motion field  Refined spatial transformer network