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CASIA OpenIR
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Joint reconstruction of neuron and ultrastructure via connectivity consensus in electron microscope volumes 期刊论文
BMC Bioinformatics, 2022, 卷号: 23, 期号: 1, 页码: 23
作者:  Hong,Bei;  Liu,Jing;  Zhai,Hao;  Liu,Jiazheng;  Shen,Lijun;  Chen,Xi;  Xie,Qiwei;  Han,Hua
Adobe PDF(3091Kb)  |  收藏  |  浏览/下载：380/86  |  提交时间：2022/11/14
Connectomics  Reconstruction  Connectivity concept  Joint optimization  Electron microscope volumes  
An Effective Encoder-Decoder Network for Neural Cell Bodies and Cell Nucleus Segmentation of EM Images 会议论文
, 德国柏林, 2019-7
作者:  Jiang Yi;  Xiao Chi;  Li Linlin;  Shen Lijun;  Chen Xi;  Han Hua
Adobe PDF(6217Kb)  |  收藏  |  浏览/下载：231/61  |  提交时间：2022/06/14
Encoder-Decoder  Electron Microscopy  Neural Cell Bodies  Cell Nucleus  Image Segmentation  
An effective AI integrated system for neuron tracing on anisotropic electron microscopy volume 期刊论文
Biomedical Signal Processing and Control, 2021, 卷号: 69, 期号: 无, 页码: 102829
作者:  Liu, Jing;  Hong, Bei;  Chen, Xi;  Xie, Qiwei;  Tang, Yuanyan;  Han, Hua
Adobe PDF(14559Kb)  |  收藏  |  浏览/下载：272/41  |  提交时间：2022/01/12
Neuron tracing  Electron microscopy  Deep learning  Convolutional LSTM  
Sparse self-attention aggregation networks for neural sequence slice interpolation 期刊论文
BioData Mining, 2021, 卷号: 14, 期号: 1, 页码: 19
作者:  Wang, Zejin;  Liu, Jing;  Chen, Xi;  Li, Guoqing;  Han, Hua
Adobe PDF(5022Kb)  |  收藏  |  浏览/下载：323/46  |  提交时间：2021/02/18
Slice interpolation  Biological tissue recovery  EM images  Sparse self-attention network  Adaptive style-balance loss  
Automatic Reconstruction of Mitochondria and Endoplasmic Reticulum in Electron Microscopy Volumes by Deep Learning 期刊论文
FRONTIERS IN NEUROSCIENCE, 2020, 期号: 14, 页码: 13
作者:  Liu, Jing;  Li, Linlin;  Yang, Yang;  Hong, Bei;  Chen, Xi;  Xie, Qiwei;  Han, Hua
浏览  |  Adobe PDF(1944Kb)  |  收藏  |  浏览/下载：330/77  |  提交时间：2020/09/21
mitochondria  endoplasmic reticulum  electron microscopes  segmentation  3D reconstruction  
An effective fully deep convolutional neural network for mitochondria segmentation based on ATUM-SEM 会议论文
, 美国休斯敦, 2018-2
作者:  Xiao C(肖驰);  Li WF(李伟夫);  Chen X(陈曦);  Han H(韩华);  Xie QW(谢启伟)
浏览  |  Adobe PDF(1314Kb)  |  收藏  |  浏览/下载：343/110  |  提交时间：2019/05/10
Electron Microscope, Deep learning, Mitochondria segmentation  
Effective automated pipeline for 3D reconstruction of synapses based on deep learning 期刊论文
BMC Bioinformatics, 2018, 卷号: 19, 期号: 1, 页码: 263
作者:  Xiao, Chi;  Li, Weifu;  Deng, Hao;  Chen, Xi;  Yang, Yang;  Xie, QiWei;  Han, Hua
浏览  |  Adobe PDF(7961Kb)  |  收藏  |  浏览/下载：358/110  |  提交时间：2019/05/06
Electron Microscope, Synapse Detection, Deep Learning, Synapse Segmentation, 3d Reconstruction Of Synapses  
Automatic Mitochondria Segmentation for EM Data Using a 3D Supervised Convolutional Network 期刊论文
FRONTIERS IN NEUROANATOMY, 2018, 期号: 12, 页码: 92
作者:  Xiao, Chi;  Chen, Xi;  Li, Weifu;  Li, Linlin;  Wang, Lu;  Xie, Qiwei;  Han, Hua
浏览  |  Adobe PDF(3873Kb)  |  收藏  |  浏览/下载：474/87  |  提交时间：2019/01/08
electron microscope  deep learning  volumetric mitochondria segmentation  mitochondria morphology  neuroinformatics  
An automated pipeline for mitochondrial segmentation on ATUM-SEM stacks 期刊论文
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2017, 卷号: 15, 期号: 3, 页码: 1750015
作者:  Li, Weifu;  Deng, Hao;  Rao, Qiang;  Xie, Qiwei;  Chen, Xi;  Han, Hua
浏览  |  Adobe PDF(1028Kb)  |  收藏  |  浏览/下载：395/144  |  提交时间：2017/09/12
Atum-sem  Membrane Enhancement  Mitochondria  Group-similarity