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A robust transformer-based pipeline of 3D cell alignment, denoise and instance segmentation on electron microscopy sequence images 期刊论文
Journal of Plant Physiology, 2024, 页码: 154236
作者:  Jiazheng, Liu;  Yafeng, Zheng;  Limei, Lin;  Jingyue, Guo;  Yanan, Lv;  Jingbin, Yuan;  Hao, Zhai;  Xi, Chen;  Lijun, Shen;  LinLin, Li;  Shunong, Bai;  Hua, Han
Adobe PDF(15549Kb)  |  收藏  |  浏览/下载：36/10  |  提交时间：2024/06/11
Deep residual contextual and subpixel convolution network for automated neuronal structure segmentation in micro-connectomics 期刊论文
Computer Methods and Programs in Biomedicine, 2022, 卷号: 219, 页码: 106759
作者:  Xiao, Chi;  Hong, Bei;  Liu, Jing;  Tang, Yuanyan;  Xie, Qiwei;  Han, Hua
Adobe PDF(2731Kb)  |  收藏  |  浏览/下载：317/77  |  提交时间：2023/01/12
Deep learning  Neuronal structure segmentation  Subpixel convolution  Electron microscopy  Micro-Connectomics  
Joint reconstruction of neuron and ultrastructure via connectivity consensus in electron microscope volumes 期刊论文
BMC Bioinformatics, 2022, 卷号: 23, 期号: 1, 页码: 23
作者:  Hong,Bei;  Liu,Jing;  Zhai,Hao;  Liu,Jiazheng;  Shen,Lijun;  Chen,Xi;  Xie,Qiwei;  Han,Hua
Adobe PDF(3091Kb)  |  收藏  |  浏览/下载：379/86  |  提交时间：2022/11/14
Connectomics  Reconstruction  Connectivity concept  Joint optimization  Electron microscope volumes  
An Effective Encoder-Decoder Network for Neural Cell Bodies and Cell Nucleus Segmentation of EM Images 会议论文
, 德国柏林, 2019-7
作者:  Jiang Yi;  Xiao Chi;  Li Linlin;  Shen Lijun;  Chen Xi;  Han Hua
Adobe PDF(6217Kb)  |  收藏  |  浏览/下载：230/61  |  提交时间：2022/06/14
Encoder-Decoder  Electron Microscopy  Neural Cell Bodies  Cell Nucleus  Image Segmentation  
Three-dimensional ATUM-SEM reconstruction and analysis of hepatic endoplasmic reticulum-organelle interactions 期刊论文
JOURNAL OF MOLECULAR CELL BIOLOGY, 2021, 卷号: 13, 期号: 9, 页码: 636-645
作者:  Jiang, Yi;  Li, Linlin;  Chen, Xi;  Liu, Jiazheng;  Yuan, Jingbin;  Xie, Qiwei;  Han, Hua
Adobe PDF(1914Kb)  |  收藏  |  浏览/下载：353/51  |  提交时间：2022/01/27
3D reconstruction  ATUM-SEM  deep learning  liver  ER  MCSs  
Geolocation Error Estimation and Correction on Long-Term MWRI Data 期刊论文
IEEE TRANSACTIONS ON GEOSCIENCE AND REMOTE SENSING, 2021, 卷号: 59, 期号: 11, 页码: 9448-9461
作者:  Liu, Jiazheng;  Li, Weifu;  Peng, Jiangtao;  Shen, Lijun;  Han, Hua;  Zhang, Peng;  Yang, Lei
Adobe PDF(8747Kb)  |  收藏  |  浏览/下载：236/12  |  提交时间：2021/12/28
Geology  Sea surface  Satellites  Earth  Instruments  Satellite broadcasting  Microwave radiometry  Geolocation error estimation and correction  Micro-Wave Radiation Imager (MWRI)  nonrigid point set registration  
Sparse self-attention aggregation networks for neural sequence slice interpolation 期刊论文
BioData Mining, 2021, 卷号: 14, 期号: 1, 页码: 19
作者:  Wang, Zejin;  Liu, Jing;  Chen, Xi;  Li, Guoqing;  Han, Hua
Adobe PDF(5022Kb)  |  收藏  |  浏览/下载：321/46  |  提交时间：2021/02/18
Slice interpolation  Biological tissue recovery  EM images  Sparse self-attention network  Adaptive style-balance loss  
Brain activity regulates loose coupling between mitochondrial and cytosolic Ca2+ transients 期刊论文
NATURE COMMUNICATIONS, 2019, 期号: 10, 页码: 13
作者:  Yuan Lin;  Lin-Lin Li;  Wei Nie;  Xiao lei Liu;  Adler, Avital;  Chi Xiao;  Fujian Lu;  Liping Wang;  Hua Han;  Xianhua Wang;  Wen-Biao Gan;  Heping Cheng
浏览  |  Adobe PDF(3557Kb)  |  收藏  |  浏览/下载：305/112  |  提交时间：2020/10/14
PROTEIN-KINASE-II  ESSENTIAL COMPONENT  DENDRITIC SPINES  MOTOR CORTEX  CALCIUM  DYSFUNCTION  FREQUENCY  DYNAMICS  DISEASE  ER  
Automatic Reconstruction of Mitochondria and Endoplasmic Reticulum in Electron Microscopy Volumes by Deep Learning 期刊论文
FRONTIERS IN NEUROSCIENCE, 2020, 期号: 14, 页码: 13
作者:  Liu, Jing;  Li, Linlin;  Yang, Yang;  Hong, Bei;  Chen, Xi;  Xie, Qiwei;  Han, Hua
浏览  |  Adobe PDF(1944Kb)  |  收藏  |  浏览/下载：329/77  |  提交时间：2020/09/21
mitochondria  endoplasmic reticulum  electron microscopes  segmentation  3D reconstruction  
Deep Contextual Residual Network for Electron Microscopy Image Segmentation in Connectomics 会议论文
, 2018-4, 美国华盛顿
作者:  Xiao C(肖驰);  Liu J(刘静);  Chen X(陈曦);  Han H(韩华);  Shu C(舒畅);  Xie QW(谢启伟)
浏览  |  Adobe PDF(614Kb)  |  收藏  |  浏览/下载：329/140  |  提交时间：2019/05/10
Connectomics, Deep Learning, Image Segmentation, Electron Microscopy