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Joint reconstruction of neuron and ultrastructure via connectivity consensus in electron microscope volumes 期刊论文
BMC Bioinformatics, 2022, 卷号: 23, 期号: 1, 页码: 23
作者:  Hong,Bei;  Liu,Jing;  Zhai,Hao;  Liu,Jiazheng;  Shen,Lijun;  Chen,Xi;  Xie,Qiwei;  Han,Hua
Adobe PDF(3091Kb)  |  收藏  |  浏览/下载：317/78  |  提交时间：2022/11/14
Connectomics  Reconstruction  Connectivity concept  Joint optimization  Electron microscope volumes  
Sparse self-attention aggregation networks for neural sequence slice interpolation 期刊论文
BioData Mining, 2021, 卷号: 14, 期号: 1, 页码: 19
作者:  Wang, Zejin;  Liu, Jing;  Chen, Xi;  Li, Guoqing;  Han, Hua
Adobe PDF(5022Kb)  |  收藏  |  浏览/下载：279/38  |  提交时间：2021/02/18
Slice interpolation  Biological tissue recovery  EM images  Sparse self-attention network  Adaptive style-balance loss  
Brain activity regulates loose coupling between mitochondrial and cytosolic Ca2+ transients 期刊论文
NATURE COMMUNICATIONS, 2019, 期号: 10, 页码: 13
作者:  Yuan Lin;  Lin-Lin Li;  Wei Nie;  Xiao lei Liu;  Adler, Avital;  Chi Xiao;  Fujian Lu;  Liping Wang;  Hua Han;  Xianhua Wang;  Wen-Biao Gan;  Heping Cheng
浏览  |  Adobe PDF(3557Kb)  |  收藏  |  浏览/下载：277/105  |  提交时间：2020/10/14
PROTEIN-KINASE-II  ESSENTIAL COMPONENT  DENDRITIC SPINES  MOTOR CORTEX  CALCIUM  DYSFUNCTION  FREQUENCY  DYNAMICS  DISEASE  ER  
Scalable volumetric imaging for ultrahigh-speed brain mapping at synaptic resolution 期刊论文
NATIONAL SCIENCE REVIEW, 2019, 卷号: 6, 期号: 5, 页码: 982-992
作者:  Wang, Hao;  Zhu, Qingyuan;  Ding, Lufeng;  Shen, Yan;  Yang, Chao-Yu;  Xu, Fang;  Shu, Chang;  Guo, Yujie;  Xiong, Zhiwei;  Shan, Qinghong;  Jia, Fan;  Su, Peng;  Yang, Qian-Ru;  Li, Bing;  Cheng, Yuxiao;  He, Xiaobin;  Chen, Xi;  Wu, Feng;  Zhou, Jiang-Ning;  Xu, Fuqiang;  Han, Hua;  Lau, Pak-Ming;  Bi, Guo-Qiang
浏览  |  Adobe PDF(25368Kb)  |  收藏  |  浏览/下载：435/71  |  提交时间：2020/03/30
fluorescence microscopy  brain mapping  tissue clearing  immunostaining  activity trace mapping  
Automatic Mitochondria Segmentation for EM Data Using a 3D Supervised Convolutional Network 期刊论文
FRONTIERS IN NEUROANATOMY, 2018, 期号: 12, 页码: 92
作者:  Xiao, Chi;  Chen, Xi;  Li, Weifu;  Li, Linlin;  Wang, Lu;  Xie, Qiwei;  Han, Hua
Adobe PDF(3873Kb)  |  收藏  |  浏览/下载：434/80  |  提交时间：2019/01/08
electron microscope  deep learning  volumetric mitochondria segmentation  mitochondria morphology  neuroinformatics  
Large scale three-dimensional reconstruction of an entire &ITCaenorhabditis elegans&IT larva using AutoCUTS-SEM 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 卷号: 200, 期号: 2, 页码: 87-96
作者:  Li, Xixia;  Ji, Gang;  Chen, Xi;  Ding, Wei;  Sun, Lei;  Xu, Wei;  Han, Hua;  Sun, Fei
浏览  |  Adobe PDF(1537Kb)  |  收藏  |  浏览/下载：417/163  |  提交时间：2018/10/10
Automation  Caenorhabditis Elegans  Scanning Electron Microscopy  3d Reconstruction  Volume Electron Microscopy  
An automated pipeline for mitochondrial segmentation on ATUM-SEM stacks 期刊论文
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2017, 卷号: 15, 期号: 3, 页码: 1750015
作者:  Li, Weifu;  Deng, Hao;  Rao, Qiang;  Xie, Qiwei;  Chen, Xi;  Han, Hua
浏览  |  Adobe PDF(1028Kb)  |  收藏  |  浏览/下载：358/129  |  提交时间：2017/09/12
Atum-sem  Membrane Enhancement  Mitochondria  Group-similarity  
Automatically Segmenting and Reconstructing Neurons in SEM images 会议论文
ICMA2016 proceedings, 中国 哈尔滨, 2016-8
作者:  Rao Q(饶强);  Han H(韩华);  Li WF(李伟夫);  Shen LJ(沈丽君);  Chen X(陈曦);  Xie QW(谢启伟)
浏览  |  Adobe PDF(1700Kb)  |  收藏  |  浏览/下载：382/142  |  提交时间：2017/06/06
Neuronal Networks Reconstruction  Deep Convolutional Neural Network  Watershed  Neuronal Boundary Detection  Drosophila Mushroom Body.  
Microscopic neural image registration based on the structure of mitochondria 会议论文
, Orlando Florida, 2017-02-10至2017-02-16
作者:  Cao HW(曹会文);  Han H(韩华);  Rao Q(饶强);  Xiao C(肖驰);  Chen X(陈曦);  Chen X(陈曦)
浏览  |  Adobe PDF(1065Kb)  |  收藏  |  浏览/下载：386/139  |  提交时间：2017/06/06
Neural Image Registration  Scanning Electron Microscopy (Sem)  Mitochondria Structure  Landmarks